PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG506300.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 422aa    MW: 44604.6 Da    PI: 5.1652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG506300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13184235155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e+I++L+
  Pavir.5KG506300.2.p 184 QRMTHIAVERNRRRQMNEYLRILRSLMPGS---YVQRGDQASIIGGAIEFIRELE 235
                          79****************************...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-13182238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.80E-14182239No hitNo description
PROSITE profilePS5088815.847183234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-16183248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10184235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9189240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.566347421IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDKEGSHHSH LDSFAPLDGA AAGDQPGGGA AEMVDYMLGQ APPHAQPPPQ SQVSFDKLSF  60
SDVLQFADFG PKLALNQPAA SAGVGDPGDD EDDDDDGYFF RFQSLPSLPG GHQGQHHANR  120
EGSKATAADD EGVHDGGGGG VSESTTLVQQ ADGGGRAEKG GDQGKSGRRK RPRTVKTSEE  180
VESQRMTHIA VERNRRRQMN EYLRILRSLM PGSYVQRGDQ ASIIGGAIEF IRELEQLIQC  240
LESQKRRRLY GGSGDAPRPV VDAAGAGAPT STQPQHHQPQ VPPPAAFFPP SLPFPAASSG  300
GGDCGGAKIL DLEAGGADAA GGLREEVAEN KSCLADIEVR ALGADAMIKI LSRRRPGQLI  360
KTIAALEDMQ MSILHTNITT IEQTVLYSFN VKILGVARYS AEDIAGAVHQ ILSFIDVNYA  420
L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184195RMTHIAVERNRR
2244248KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277501e-137KJ727750.1 Zea mays clone pUT5691 bHLH transcription factor (bHLH22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961059.10.0PREDICTED: transcription factor FAMA
SwissprotQ56YJ81e-112FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A0A9GYP10.0A0A0A9GYP1_ARUDO; FMA
STRINGSi021834m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.17e-54bHLH family protein